Reed, Tavis J. (2026) 2026. “Methods for Mapping and Analyzing Context-Specific Protein-Protein Interaction Networks.”. Annual Review of Biomedical Data Science 9 (1): 171-96. doi:10.1146/annurev-biodatasci-092724-033748.

Reed, Tavis J, Laura Haubold, Josiah Hutton, Olga Troyanskaya, and Ileana M Cristea. (2026) 2026. “Exploring How Workflow Variations in Denaturation-Based Assays Impact Global Protein-Protein Interaction Predictions.”. Molecular & Cellular Proteomics : MCP 25 (2): 101479. doi:10.1016/j.mcpro.2025.101479.

Metzger, Peter, Tavis J Reed, Krystal Lum, Jordy Botello, Lifei Jiang, Clifford Brangwynne, Olga Troyanskaya, and Ileana M Cristea. (2025) 2025. “Sequestration of Ribosome Biogenesis Factors in HSV-1 Nuclear Aggregates Revealed by Spatially Resolved Thermal Profiling.”. Science Advances 11 (26): eadw6814. doi:10.1126/sciadv.adw6814.

Justice, Joshua, Todd Greco, Josiah Hutton, Tavis J Reed, Megan Mair, Juan Botas, and Ileana M Cristea. (2025) 2025. “Multi-Epitope Immunocapture of Huntingtin Reveals Striatum-Selective Molecular Signatures.”. Molecular Systems Biology. doi:10.1038/s44320-025-00096-3.

Lum, Krystal, Tavis J Reed, Jinhang Yang, and Ileana M Cristea. (2024) 2024. “Differential Contributions of Interferon Classes to Host Inflammatory Responses and Restricting Virus Progeny Production.”. Journal of Proteome Research. doi:10.1021/acs.jproteome.3c00826.

Justice, Joshua, Tavis J Reed, Brett Phelan, Todd Greco, Josiah Hutton, and Ileana M Cristea. (2024) 2024. “DNA-PK and ATM Drive Phosphorylation Signatures That Antagonistically Regulate Cytokine Responses to Herpesvirus Infection or DNA Damage.”. Cell Systems 15 (4): 339-361.e8. doi:10.1016/j.cels.2024.03.003.

Reed, Tavis J, Matthew D Tyl, Alicja Tadych, Olga Troyanskaya, and Ileana M Cristea. (2024) 2024. “Tapioca: A Platform for Predicting de Novo Protein-Protein Interactions in Dynamic Contexts.”. Nature Methods 21 (3): 488-500. doi:10.1038/s41592-024-02179-9.