Greco, Todd, Christopher Secker, Eduardo Silva Ramos, Joel Federspiel, Jeh-Ping Liu, Alma Perez, Ismael Al-Ramahi, et al. 2022. “Dynamics of Huntingtin Protein Interactions in the Striatum Identifies Candidate Modifiers of Huntington Disease”. Cell Syst. 13 (4). Elsevier BV: 304–320.e5.

Serrero, Manutea, Virginie Girault, Sebastian Weigang, Todd Greco, Ana Ramos Nascimento, Fenja Anderson, Antonio Piras, et al. 2022. “The Interferon-Inducible GTPase MxB Promotes Capsid Disassembly and Genome Release of Herpesviruses”. Elife 11. eLife Sciences Publications, Ltd: e76804.

Shi, Wei, Xinlei Sheng, Kerry Dorr, Josiah Hutton, James Emerson, Haley Davies, Tia Andrade, et al. (2021) 2021. “Cardiac Proteomics Reveals Sex Chromosome-Dependent Differences Between Males and Females That Arise Prior to Gonad Formation”. Developmental Cell 56 (21). Elsevier: 3019–3034.e7. doi:10.1016/j.devcel.2021.09.022.

Howard, Timothy, Marni Crow, Todd Greco, Krystal Lum, Tuo Li, and Ileana Cristea. (2021) 2021. “The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, With Its Acetylation Acting As a Localization Toggle”. MSystems 6 (3): e0039721. doi:10.1128/mSystems.00397-21.

Song, Bokai, Dawei Liu, Todd Greco, and Ileana Cristea. 2021. “Post-Translational Modification Control of Viral DNA Sensors and Innate Immune Signaling”. Adv Virus Res 109: 163-99. doi:10.1016/bs.aivir.2021.03.001.

Song, Bokai, Todd Greco, Krystal Lum, Caroline Taber, and Ileana Cristea. (2020) 2020. “The DNA Sensor CGAS Is Decorated by Acetylation and Phosphorylation Modifications in the Context of Immune Signaling”. Mol Cell Proteomics 19 (7): 1193-1208. doi:10.1074/mcp.RA120.001981.

Greco, Todd, Michelle Kennedy, and Ileana Cristea. (2020) 2020. “Proteomic Technologies for Deciphering Local and Global Protein Interactions”. Trends Biochem Sci 45 (5): 454-55. doi:10.1016/j.tibs.2020.01.003.

Hashimoto, Yutaka, Todd Greco, and Ileana Cristea. 2019. “Contribution of Mass Spectrometry-Based Proteomics to Discoveries in Developmental Biology”. Adv Exp Med Biol 1140: 143-54. doi:10.1007/978-3-030-15950-4_8.

Hernández Durán, Anna, Todd Greco, Benjamin Vollmer, Ileana Cristea, Kay Grünewald, and Maya Topf. (2019) 2019. “Protein Interactions and Consensus Clustering Analysis Uncover Insights into Herpesvirus Virion Structure and Function Relationships”. PLoS Biol 17 (6): e3000316. doi:10.1371/journal.pbio.3000316.

Federspiel, Joel, Todd Greco, Krystal Lum, and Ileana Cristea. (2019) 2019. “Hdac4 Interactions in Huntington’s Disease Viewed Through the Prism of Multiomics”. Mol Cell Proteomics 18 (8 suppl 1): S92-S113. doi:10.1074/mcp.RA118.001253.

Esposito, Mark, Nandini Mondal, Todd Greco, Yong Wei, Chiara Spadazzi, Song-Chang Lin, Hanqiu Zheng, et al. (2019) 2019. “Bone Vascular Niche E-Selectin Induces Mesenchymal-Epithelial Transition and Wnt Activation in Cancer Cells to Promote Bone Metastasis”. Nat Cell Biol 21 (5): 627-39. doi:10.1038/s41556-019-0309-2.

Hashimoto, Yutaka, Noriyuki Kinoshita, Todd Greco, Joel Federspiel, Pierre Jean Beltran, Naoto Ueno, and Ileana Cristea. (2019) 2019. “Mechanical Force Induces Phosphorylation-Mediated Signaling That Underlies Tissue Response and Robustness in Xenopus Embryos”. Cell Syst 8 (3): 226-241.e7. doi:10.1016/j.cels.2019.01.006.

Carabetta, Valerie, Todd Greco, Ileana Cristea, and David Dubnau. (2019) 2019. “YfmK Is an N-Lysine Acetyltransferase That Directly Acetylates the Histone-Like Protein HBsu in”. Proc Natl Acad Sci U S A 116 (9): 3752-57. doi:10.1073/pnas.1815511116.

Tsai, Yuan-Chin, Todd Greco, Apaporn Boonmee, Yana Miteva, and Ileana Cristea. (2012) 2012. “Functional Proteomics Establishes the Interaction of SIRT7 With Chromatin Remodeling Complexes and Expands Its Role in Regulation of RNA Polymerase I Transcription”. Mol Cell Proteomics 11 (2): M111.015156. doi:10.1074/mcp.M111.015156.

Greco, Todd, Fang Yu, Amanda Guise, and Ileana Cristea. (2011) 2011. “Nuclear Import of Histone Deacetylase 5 by Requisite Nuclear Localization Signal Phosphorylation”. Mol Cell Proteomics 10 (2): M110.004317. doi:10.1074/mcp.M110.004317.

Carabetta, Valerie, Tuo Li, Anisha Shakya, Todd Greco, and Ileana Cristea. (2010) 2010. “Integrating Lys-N Proteolysis and N-Terminal Guanidination for Improved Fragmentation and Relative Quantification of Singly-Charged Ions”. J Am Soc Mass Spectrom 21 (6): 1050-60. doi:10.1016/j.jasms.2010.02.004.

Greco, Todd, and Ileana Cristea. (2016) 2016. “The Biochemical Evolution of Protein Complexes”. Trends Biochem Sci 41 (1): 4-6. doi:10.1016/j.tibs.2015.11.007.

Greco, Todd, Yana Miteva, Frank Conlon, and Ileana Cristea. 2012. “Complementary Proteomic Analysis of Protein Complexes”. Methods Mol Biol 917: 391-407. doi:10.1007/978-1-61779-992-1_22.

Giguère, Sophie, Amanda Guise, Pierre Jean Beltran, Preeti Joshi, Todd Greco, Olivia Quach, Jeffery Kong, and Ileana Cristea. (2016) 2016. “The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression”. Mol Cell Proteomics 15 (3): 791-809. doi:10.1074/mcp.M115.054619.

Conlon, Frank, Yana Miteva, Erin Kaltenbrun, Lauren Waldron, Todd Greco, and Ileana Cristea. 2012. “Immunoisolation of Protein Complexes from Xenopus”. Methods Mol Biol 917: 369-90. doi:10.1007/978-1-61779-992-1_21.

Koyuncu, Orkide, Ren Song, Todd Greco, Ileana Cristea, and Lynn Enquist. (2015) 2015. “The Number of Alphaherpesvirus Particles Infecting Axons and the Axonal Protein Repertoire Determines the Outcome of Neuronal Infection”. MBio 6 (2). doi:10.1128/mBio.00276-15.

Guise, Amanda, Todd Greco, Irene Zhang, Fang Yu, and Ileana Cristea. (2012) 2012. “Aurora B-Dependent Regulation of Class IIa Histone Deacetylases by Mitotic Nuclear Localization Signal Phosphorylation”. Mol Cell Proteomics 11 (11): 1220-9. doi:10.1074/mcp.M112.021030.

Sauls, Kimberly, Todd Greco, Li Wang, Meng Zou, Michelle Villasmil, Li Qian, Ileana Cristea, and Frank Conlon. (2018) 2018. “Initiating Events in Direct Cardiomyocyte Reprogramming”. Cell Rep 22 (7): 1913-22. doi:10.1016/j.celrep.2018.01.047.

Rowles, Daniell, Yuan-Chin Tsai, Todd Greco, Aaron Lin, Minghao Li, Justin Yeh, and Ileana Cristea. (2015) 2015. “DNA Methyltransferase DNMT3A Associates With Viral Proteins and Impacts HSV-1 Infection”. Proteomics 15 (12): 1968-82. doi:10.1002/pmic.201500035.

Gudleski-O’Regan, Nicole, Todd Greco, Ileana Cristea, and Thomas Shenk. (2012) 2012. “Increased Expression of LDL Receptor-Related Protein 1 During Human Cytomegalovirus Infection Reduces Virion Cholesterol and Infectivity”. Cell Host Microbe 12 (1): 86-96. doi:10.1016/j.chom.2012.05.012.

Mirzaei, Mehdi, Veer Gupta, Joel Chick, Todd Greco, Yunqi Wu, Nitin Chitranshi, Roshana Vander Wall, et al. (2017) 2017. “Age-Related Neurodegenerative Disease Associated Pathways Identified in Retinal and Vitreous Proteome from Human Glaucoma Eyes”. Sci Rep 7 (1): 12685. doi:10.1038/s41598-017-12858-7.

Diner, Benjamin, Tuo Li, Todd Greco, Marni Crow, John Fuesler, Jennifer Wang, and Ileana Cristea. (2015) 2015. “The Functional Interactome of PYHIN Immune Regulators Reveals IFIX Is a Sensor of Viral DNA”. Mol Syst Biol 11 (1): 787. doi:10.15252/msb.20145808.

Tsai, Yuan-Chin, Todd Greco, Apaporn Boonmee, Yana Miteva, and Ileana Cristea. (2012) 2012. “Functional Proteomics Establishes the Interaction of SIRT7 With Chromatin Remodeling Complexes and Expands Its Role in Regulation of RNA Polymerase I Transcription”. Mol Cell Proteomics 11 (5): 60-76. doi:10.1074/mcp.A111.015156.

Kennedy, Leslie, Erin Kaltenbrun, Todd Greco, Brenda Temple, Laura Herring, Ileana Cristea, and Frank Conlon. (2017) 2017. “Formation of a TBX20-CASZ1 Protein Complex Is Protective Against Dilated Cardiomyopathy and Critical for Cardiac Homeostasis”. PLoS Genet 13 (9): e1007011. doi:10.1371/journal.pgen.1007011.

Mathias, Rommel, Todd Greco, Adam Oberstein, Hanna Budayeva, Rumela Chakrabarti, Elizabeth Rowland, Yibin Kang, Thomas Shenk, and Ileana Cristea. (2014) 2014. “Sirtuin 4 Is a Lipoamidase Regulating Pyruvate Dehydrogenase Complex Activity”. Cell 159 (7): 1615-25. doi:10.1016/j.cell.2014.11.046.

Goodarzi, Hani, Hamed Najafabadi, Panos Oikonomou, Todd Greco, Lisa Fish, Reza Salavati, Ileana Cristea, and Saeed Tavazoie. (2012) 2012. “Systematic Discovery of Structural Elements Governing Stability of Mammalian Messenger RNAs”. Nature 485 (7397): 264-8. doi:10.1038/nature11013.

Rowland, Elizabeth, Todd Greco, Caroline Snowden, Anne McCabe, Thomas Silhavy, and Ileana Cristea. (2017) 2017. “Sirtuin Lipoamidase Activity Is Conserved in Bacteria As a Regulator of Metabolic Enzyme Complexes”. MBio 8 (5). doi:10.1128/mBio.01096-17.

Greco, Todd, Benjamin Diner, and Ileana Cristea. (2014) 2014. “The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology”. Annu Rev Virol 1 (1): 581-604. doi:10.1146/annurev-virology-031413-085527.

Greco, Todd, and Ileana Cristea. (2017) 2017. “Proteomics Tracing the Footsteps of Infectious Disease”. Mol Cell Proteomics 16 (4 suppl 1): S5-S14. doi:10.1074/mcp.O116.066001.

Amin, Nirav, Todd Greco, Lauren Kuchenbrod, Maggie Rigney, Mei-I Chung, John Wallingford, Ileana Cristea, and Frank Conlon. (2014) 2014. “Proteomic Profiling of Cardiac Tissue by Isolation of Nuclei Tagged in Specific Cell Types (INTACT)”. Development 141 (4): 962-73. doi:10.1242/dev.098327.

Viktorovskaya, Olga, Todd Greco, Ileana Cristea, and Sunnie Thompson. (2016) 2016. “Identification of RNA Binding Proteins Associated With Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements”. PLoS Negl Trop Dis 10 (8): e0004921. doi:10.1371/journal.pntd.0004921.

Tsai, Yuan-Chin, Todd Greco, and Ileana Cristea. (2014) 2014. “Sirtuin 7 Plays a Role in Ribosome Biogenesis and Protein Synthesis”. Mol Cell Proteomics 13 (1): 73-83. doi:10.1074/mcp.M113.031377.

Pastino, Alexandra, Todd Greco, Rommel Mathias, Ileana Cristea, and Jean Schwarzbauer. (2017) 2017. “Stimulatory Effects of Advanced Glycation Endproducts (AGEs) on Fibronectin Matrix Assembly”. Matrix Biol 59: 39-53. doi:10.1016/j.matbio.2016.07.003.

Kaltenbrun, Erin, Todd Greco, Christopher Slagle, Leslie Kennedy, Tuo Li, Ileana Cristea, and Frank Conlon. (2013) 2013. “A Gro TLE-NuRD Corepressor Complex Facilitates Tbx20-Dependent Transcriptional Repression”. J Proteome Res 12 (12): 5395-409. doi:10.1021/pr400818c.

Carabetta, Valerie, Todd Greco, Andrew Tanner, Ileana Cristea, and David Dubnau. (2016) 2016. “Temporal Regulation of the Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth”. MSystems 1 (3). doi:10.1128/mSystems.00005-16.

Lin, Aaron, Todd Greco, Katinka Döhner, Beate Sodeik, and Ileana Cristea. (2013) 2013. “A Proteomic Perspective of Inbuilt Viral Protein Regulation: PUL46 Tegument Protein Is Targeted for Degradation by ICP0 During Herpes Simplex Virus Type 1 Infection”. Mol Cell Proteomics 12 (11): 3237-52. doi:10.1074/mcp.M113.030866.

Luo, Yang, Erica Jacobs, Todd Greco, Kevin Mohammed, Tommy Tong, Sarah Keegan, James Binley, et al. (2016) 2016. “HIV-Host Interactome Revealed Directly from Infected Cells”. Nat Microbiol 1 (7): 16068. doi:10.1038/nmicrobiol.2016.68.

Kratchmarov, Radomir, Tal Kramer, Todd Greco, Matthew Taylor, Toh Hean Ch’ng, Ileana Cristea, and Lynn Enquist. (2013) 2013. “Glycoproteins GE and GI Are Required for Efficient KIF1A-Dependent Anterograde Axonal Transport of Alphaherpesvirus Particles in Neurons”. J Virol 87 (17): 9431-40. doi:10.1128/JVI.01317-13.

Mathias, Rommel, Todd Greco, and Ileana Cristea. 2016. “Identification of Sirtuin4 (SIRT4) Protein Interactions: Uncovering Candidate Acyl-Modified Mitochondrial Substrates and Enzymatic Regulators”. Methods Mol Biol 1436: 213-39. doi:10.1007/978-1-4939-3667-0_15.

Joshi, Preeti, Todd Greco, Amanda Guise, Yang Luo, Fang Yu, Alexey Nesvizhskii, and Ileana Cristea. 2013. “The Functional Interactome Landscape of the Human Histone Deacetylase Family”. Mol Syst Biol 9: 672. doi:10.1038/msb.2013.26.

Greco, Todd, Amanda Guise, and Ileana Cristea. 2016. “Determining the Composition and Stability of Protein Complexes Using an Integrated Label-Free and Stable Isotope Labeling Strategy”. Methods Mol Biol 1410: 39-63. doi:10.1007/978-1-4939-3524-6_3.

Lenarcic, Erik, Dori Landry, Todd Greco, Ileana Cristea, and Sunnie Thompson. (2013) 2013. “Thiouracil Cross-Linking Mass Spectrometry: A Cell-Based Method to Identify Host Factors Involved in Viral Amplification”. J Virol 87 (15): 8697-712. doi:10.1128/JVI.00950-13.

Waldron, Lauren, Jeffrey Steimle, Todd Greco, Nicholas Gomez, Kerry Dorr, Junghun Kweon, Brenda Temple, et al. (2016) 2016. “The Cardiac TBX5 Interactome Reveals a Chromatin Remodeling Network Essential for Cardiac Septation”. Dev Cell 36 (3): 262-75. doi:10.1016/j.devcel.2016.01.009.

Carabetta, Valerie, Andrew Tanner, Todd Greco, Melissa Defrancesco, Ileana Cristea, and David Dubnau. (2013) 2013. “A Complex of YlbF, YmcA and YaaT Regulates Sporulation, Competence and Biofilm Formation by Accelerating the Phosphorylation of Spo0A”. Mol Microbiol 88 (2): 283-300. doi:10.1111/mmi.12186.

Song, Ren, Orkide Koyuncu, Todd Greco, Benjamin Diner, Ileana Cristea, and Lynn Enquist. (2016) 2016. “Two Modes of the Axonal Interferon Response Limit Alphaherpesvirus Neuroinvasion”. MBio 7 (1). doi:10.1128/mBio.02145-15.